{
  "_id": "6a1f0ffeb401979e7341d6ce",
  "Package": "BSTZINB",
  "Type": "Package",
  "Title": "Association Among Disease Counts and Socio-Environmental Factors",
  "Version": "2.0.1",
  "Authors@R": "c(\nperson(\"Suman\",\"Majumder\",email=\"smajumd2@gmail.com\",role=c(\"cre\",\"aut\",\"cph\")),\nperson(\"Yoon-Bae\",\"Jun\",role=c(\"aut\",\"cph\")),\nperson(\"Sounak\",\"Chakraborty\",role=\"ctb\"),\nperson(\"Chae-Young\",\"Lim\",role=\"ctb\"),\nperson(\"Tanujit\",\"Dey\",role=\"ctb\")\n)",
  "Description": "Estimation of association between disease or death counts\n(e.g. COVID-19) and socio-environmental risk factors using a\nzero-inflated Bayesian spatiotemporal model. Non-spatiotemporal\nmodels and/or models without zero-inflation are also included\nfor comparison. Functions to produce corresponding maps are\nalso included. See Chakraborty et al. (2022)\n<doi:10.1007/s13253-022-00487-1> for more details on the\nmethod.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "URL": "https://github.com/SumanM47/BSTZINB",
  "BugReports": "https://github.com/SumanM47/BSTZINB/issues",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nlibssl-dev libnode-dev",
  "Repository": "https://sumanm47.r-universe.dev",
  "Date/Publication": "2026-03-18 08:43:04 UTC",
  "RemoteUrl": "https://github.com/sumanm47/bstzinb",
  "RemoteRef": "HEAD",
  "RemoteSha": "5b6a86797cd93168475fb13333d660024c8f2bdd",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-17 08:26:01 UTC",
    "User": "root"
  },
  "Author": "Suman Majumder [cre, aut, cph],\nYoon-Bae Jun [aut, cph],\nSounak Chakraborty [ctb],\nChae-Young Lim [ctb],\nTanujit Dey [ctb]",
  "Maintainer": "Suman Majumder <smajumd2@gmail.com>",
  "MD5sum": "9fcc2e62300f6347beae11c7d9bec0cc",
  "_user": "sumanm47",
  "_type": "src",
  "_file": "BSTZINB_2.0.1.tar.gz",
  "_fileid": "caf22fae1b0e3132ffa51429c954ec590c0313453a92b2693da8298e1ea52667",
  "_filesize": 1584012,
  "_sha256": "caf22fae1b0e3132ffa51429c954ec590c0313453a92b2693da8298e1ea52667",
  "_created": "2026-05-17T08:26:01.000Z",
  "_published": "2026-06-02T17:16:46.514Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79129676825,
      "time": 211,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7040823817"
    },
    {
      "job": 79129677118,
      "time": 196,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040822094"
    },
    {
      "job": 79129676784,
      "time": 183,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7040817029"
    },
    {
      "job": 79129676928,
      "time": 175,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040816747"
    },
    {
      "job": 79129676427,
      "time": 303,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040800017"
    },
    {
      "job": 79129676085,
      "time": 139,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7364845078"
    },
    {
      "job": 79129676571,
      "time": 150,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7040817107"
    },
    {
      "job": 79129676845,
      "time": 135,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7040815257"
    },
    {
      "job": 79129677715,
      "time": 167,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7040818824"
    }
  ],
  "_buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/sumanm47/bstzinb",
  "_commit": {
    "id": "5b6a86797cd93168475fb13333d660024c8f2bdd",
    "author": "unknown <smajumd2@gmail.com>",
    "committer": "unknown <smajumd2@gmail.com>",
    "message": "upds\n",
    "time": 1773823384
  },
  "_maintainer": {
    "name": "Suman Majumder",
    "email": "smajumd2@gmail.com",
    "login": "sumanm47",
    "description": "",
    "uuid": 21116045
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5",
      "role": "Depends"
    },
    {
      "package": "BayesLogit",
      "role": "Imports"
    },
    {
      "package": "coda",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "gt",
      "role": "Imports"
    },
    {
      "package": "gtsummary",
      "role": "Imports"
    },
    {
      "package": "maps",
      "role": "Imports"
    },
    {
      "package": "matrixcalc",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "msm",
      "role": "Imports"
    },
    {
      "package": "reshape",
      "role": "Imports"
    },
    {
      "package": "spam",
      "role": "Imports"
    },
    {
      "package": "viridis",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "CorrMixed",
      "role": "Suggests"
    },
    {
      "package": "ape",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "sumanm47",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-45",
      "n": 2
    },
    {
      "week": "2025-47",
      "n": 3
    },
    {
      "week": "2026-12",
      "n": 3
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "sumanm47",
      "count": 12,
      "uuid": 21116045
    }
  ],
  "_userbio": {
    "uuid": 21116045,
    "type": "user",
    "name": "Suman Majumder"
  },
  "_downloads": {
    "count": 178,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/BSTZINB"
  },
  "_devurl": "https://github.com/sumanm47/bstzinb",
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BSTZINB.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/sumanm47/bstzinb",
  "_realowner": "sumanm47",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2024-10-31"
    },
    {
      "version": "1.0.1",
      "date": "2024-10-31"
    },
    {
      "version": "2.0.0",
      "date": "2025-01-30"
    },
    {
      "version": "2.0.1",
      "date": "2025-11-19"
    }
  ],
  "_exports": [
    "BNB",
    "BSTNB",
    "BSTZINB",
    "BZINB",
    "compute_NB_DIC",
    "compute_ZINB_DIC",
    "conv.test",
    "get_adj_mat",
    "print.DCMB",
    "print.summ.DCMB",
    "qRankPar",
    "qRankParTop",
    "ResultTableSummary",
    "ResultTableSummary2",
    "summary.DCMB",
    "TimetrendCurve",
    "USDmapCount"
  ],
  "_datasets": [
    {
      "name": "county.adjacency",
      "title": "county.adjacency: A dataframe containing neighborhood information for counties in the US",
      "object": "county.adjacency",
      "class": [
        "data.frame"
      ],
      "fields": [
        "Countyname",
        "fips.County",
        "neighborname",
        "fipsneighbor"
      ],
      "rows": 22200,
      "table": true,
      "tojson": true
    },
    {
      "name": "simdat",
      "title": "simdat: A simulated dataset containing response and covariates with region and time information",
      "object": "simdat",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sid",
        "tid",
        "y",
        "V1",
        "x"
      ],
      "rows": 2376,
      "table": true,
      "tojson": true
    },
    {
      "name": "synth_dat_IA",
      "title": "synth_dat_IA: A dataset containing county-wise synthsized counts for the state of Iowa over 16 time points and a covariate used to generate the data",
      "object": "synth_dat_IA",
      "class": [
        "data.frame"
      ],
      "fields": [
        "sid",
        "tid",
        "y",
        "x"
      ],
      "rows": 1584,
      "table": true,
      "tojson": true
    },
    {
      "name": "USAcities",
      "title": "USAcities: A dataset containing state and county information for the cities in the United States",
      "object": "USAcities",
      "class": [
        "data.frame"
      ],
      "fields": [
        "state_id",
        "county_name",
        "county_fips",
        "population"
      ],
      "rows": 3232,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "BNB",
      "title": "Fit a Bayesian Negative Binomial Model",
      "topics": [
        "BNB"
      ]
    },
    {
      "page": "BSTNB",
      "title": "Fit a Bayesian Spatiotemporal Negative Binomial model",
      "topics": [
        "BSTNB"
      ]
    },
    {
      "page": "BSTZINB",
      "title": "Fit a Bayesian Spatiotemporal Zero Inflated Negative Binomial model",
      "topics": [
        "BSTZINB"
      ]
    },
    {
      "page": "BZINB",
      "title": "Fit a Bayesian Zero Inflated Negative Binomial Model",
      "topics": [
        "BZINB"
      ]
    },
    {
      "page": "compute_NB_DIC",
      "title": "DIC for BSTNB or BNB fitted objects",
      "topics": [
        "compute_NB_DIC"
      ]
    },
    {
      "page": "compute_ZINB_DIC",
      "title": "DIC for BSTZINB fitted objects",
      "topics": [
        "compute_ZINB_DIC"
      ]
    },
    {
      "page": "conv.test",
      "title": "convergence test for parameters in the fitted objects",
      "topics": [
        "conv.test"
      ]
    },
    {
      "page": "county.adjacency",
      "title": "county.adjacency: A dataframe containing neighborhood information for counties in the US",
      "topics": [
        "county.adjacency"
      ]
    },
    {
      "page": "get_adj_mat",
      "title": "Adjacency matrix for counties of one or many states in the United States",
      "topics": [
        "get_adj_mat"
      ]
    },
    {
      "page": "print.DCMB",
      "title": "Print function for DCMB class of objects",
      "topics": [
        "print.DCMB"
      ]
    },
    {
      "page": "print.summ.DCMB",
      "title": "Prints out the summary of a DCMB object",
      "topics": [
        "print.summ.DCMB"
      ]
    },
    {
      "page": "qRankPar",
      "title": "Bar plot for time-averaged log-q estimates over quantile-representative counties (descending order)",
      "topics": [
        "qRankPar"
      ]
    },
    {
      "page": "qRankParTop",
      "title": "Bar plot for time-averaged log-q estimates over top ranking counties (descending order)",
      "topics": [
        "qRankParTop"
      ]
    },
    {
      "page": "ResultTableSummary",
      "title": "Summary Table for a fitted object",
      "topics": [
        "ResultTableSummary"
      ]
    },
    {
      "page": "ResultTableSummary2",
      "title": "Generate a summary table of the outputs all different methods given the data",
      "topics": [
        "ResultTableSummary2"
      ]
    },
    {
      "page": "simdat",
      "title": "simdat: A simulated dataset containing response and covariates with region and time information",
      "topics": [
        "simdat"
      ]
    },
    {
      "page": "summary.DCMB",
      "title": "Summary function for objects of class DCMB",
      "topics": [
        "summary.DCMB"
      ]
    },
    {
      "page": "synth_dat_IA",
      "title": "synth_dat_IA: A dataset containing county-wise synthsized counts for the state of Iowa over 16 time points and a covariate used to generate the data",
      "topics": [
        "synth_dat_IA"
      ]
    },
    {
      "page": "TimetrendCurve",
      "title": "Time-trend curve over the study time domain for counties in the US",
      "topics": [
        "TimetrendCurve"
      ]
    },
    {
      "page": "USAcities",
      "title": "USAcities: A dataset containing state and county information for the cities in the United States",
      "topics": [
        "USAcities"
      ]
    },
    {
      "page": "USDmapCount",
      "title": "Draw spatial maps of various quantities over regions in the US",
      "topics": [
        "USDmapCount"
      ]
    }
  ],
  "_readme": "https://github.com/sumanm47/bstzinb/raw/HEAD/README.md",
  "_rundeps": [
    "base64enc",
    "BayesLogit",
    "bigD",
    "bitops",
    "bslib",
    "cachem",
    "cards",
    "cardx",
    "cli",
    "coda",
    "commonmark",
    "cpp11",
    "curl",
    "digest",
    "dotCall64",
    "dplyr",
    "evaluate",
    "expm",
    "farver",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "ggplot2",
    "glue",
    "gridExtra",
    "gt",
    "gtable",
    "gtsummary",
    "highr",
    "htmltools",
    "htmlwidgets",
    "isoband",
    "jquerylib",
    "jsonlite",
    "juicyjuice",
    "knitr",
    "labeling",
    "lattice",
    "lifecycle",
    "litedown",
    "magrittr",
    "maps",
    "markdown",
    "Matrix",
    "matrixcalc",
    "memoise",
    "mime",
    "msm",
    "mvtnorm",
    "pillar",
    "pkgconfig",
    "plyr",
    "purrr",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "reactable",
    "reactR",
    "reshape",
    "rlang",
    "rmarkdown",
    "S7",
    "sass",
    "scales",
    "spam",
    "stringi",
    "stringr",
    "survival",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "V8",
    "vctrs",
    "viridis",
    "viridisLite",
    "withr",
    "xfun",
    "xml2",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "BSTZINB_vignette.Rmd",
      "filename": "BSTZINB_vignette.html",
      "title": "BSTZINB_vignette",
      "engine": "knitr::rmarkdown",
      "headings": [],
      "created": "2024-06-07 20:18:02",
      "modified": "2026-03-17 07:07:38",
      "commits": 16
    }
  ],
  "_score": 4.176091259055681,
  "_indexed": true,
  "_nocasepkg": "bstzinb",
  "_universes": [
    "sumanm47"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-05-17T08:28:35.000Z",
      "distro": "noble",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "17963cd1c8e1d7ce3d2194691534001552d25da5298b2c77ae4b0f18837f4c5f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "2.0.1",
      "date": "2026-05-17T08:28:29.000Z",
      "distro": "noble",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "ed7178d88bfee73e281c69502868670d2e69f3770aaaa0cacda27c26e88b678c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-05-17T08:28:06.000Z",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "763b0285cafa430c02212ab24719854998c8116ee96fa16dd72ce62fbc785f75",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "2.0.1",
      "date": "2026-05-17T08:28:02.000Z",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "677d66fe5fdc43ffc2f3c586d79485d720ba0650d9795d4d5ed0b50a7291b345",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-05-17T08:27:41.000Z",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "881416835bef3c0e831ff8e23f2e01da0aed8b069663f8b25206c2a2db06567e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-05-17T08:27:18.000Z",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "60751ddd379dcd59c0cd9f586fc880dc20fab1df370efce3dd60cd9126804731",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "2.0.1",
      "date": "2026-05-17T08:27:42.000Z",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "48727b36389dea281516f2eeb1ca86807c49bcad7407578b6f686a4c4971d8eb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "2.0.1",
      "date": "2026-06-02T17:16:24.000Z",
      "commit": "5b6a86797cd93168475fb13333d660024c8f2bdd",
      "fileid": "ce62c4d487e9bb56bac74a4d9505c1eb12a0154bf1daac3448a8a9b75f3dc45f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/sumanm47/actions/runs/25985722090"
    }
  ]
}