Package: BSTZINB 2.0.0

BSTZINB: Association Among Disease Counts and Socio-Environmental Factors

Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.

Authors:Suman Majumder [cre, aut, cph], Yoon-Bae Jun [aut, cph], Sounak Chakraborty [ctb], Chae-Young Lim [ctb], Tanujit Dey [ctb]

BSTZINB_2.0.0.tar.gz
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BSTZINB.pdf |BSTZINB.html✨
BSTZINB/json (API)
NEWS

# Install 'BSTZINB' in R:
install.packages('BSTZINB', repos = c('https://sumanm47.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sumanm47/bstzinb/issues

Datasets:
  • USAcities - USAcities: A dataset containing state and county information for the cities in the United States
  • county.adjacency - County.adjacency: A dataframe containing neighborhood information for counties in the US
  • simdat - Simdat: A simulated dataset containing response and covariates with region and time information

On CRAN:

Conda:

4.70 score 2 scripts 224 downloads 14 exports 93 dependencies

Last updated 2 months agofrom:9e63ae589d. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 31 2025
R-4.5-winOKMar 31 2025
R-4.5-macOKMar 31 2025
R-4.5-linuxOKMar 31 2025
R-4.4-winOKMar 31 2025
R-4.4-macOKMar 31 2025
R-4.4-linuxOKMar 31 2025
R-4.3-winOKMar 31 2025
R-4.3-macOKMar 31 2025

Exports:BNBBSTNBBSTZINBBZINBcompute_NB_DICcompute_ZINB_DICconv.testget_adj_matqRankParqRankParTopResultTableSummaryResultTableSummary2TimetrendCurveUSDmapCount

Dependencies:base64encBayesLogitbigDbitopsbootbslibcachemcardsclicodacolorspacecommonmarkcpp11curldigestdotCall64dplyrevaluateexpmfansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtgtablegtsummaryhighrhtmltoolshtmlwidgetsisobandjquerylibjsonlitejuicyjuiceknitrlabelinglatticelifecyclelitedownmagrittrmapsmarkdownMASSMatrixmatrixcalcMatrixModelsmcmcMCMCpackmemoisemgcvmimemsmmunsellmvtnormnlmepillarpkgconfigplyrpurrrquantregR6rappdirsRColorBrewerRcppreactablereactRreshaperlangrmarkdownsassscalesspamSparseMstringistringrsurvivaltibbletidyrtidyselecttinytexutf8V8vctrsviridisviridisLitewithrxfunxml2yaml

BSTZINB_vignette

Rendered fromBSTZINB_vignette.Rmdusingknitr::rmarkdownon Mar 31 2025.

Last update: 2024-10-31
Started: 2024-06-07