Package: BSTZINB 1.0.1.9000

BSTZINB: Association Among Disease Counts and Socio-Environmental Factors

Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.

Authors:Suman Majumder [cre, aut, cph], Yoon-Bae Jun [aut, cph], Sounak Chakraborty [ctb], Chae-Young Lim [ctb], Tanujit Dey [ctb]

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BSTZINB.pdf |BSTZINB.html✨
BSTZINB/json (API)
NEWS

# Install 'BSTZINB' in R:
install.packages('BSTZINB', repos = c('https://sumanm47.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/sumanm47/bstzinb/issues

Datasets:
  • USAcities - USAcities: A dataset containing state and county information for the cities in the United States
  • county.adjacency - County.adjacency: A dataframe containing neighborhood information for counties in the US
  • simdat - Simdat: A simulated dataset containing response and covariates with region and time information

On CRAN:

4.65 score 2 scripts 14 exports 92 dependencies

Last updated 19 days agofrom:02729b2fa0. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 01 2024
R-4.5-winOKNov 01 2024
R-4.5-linuxOKNov 01 2024
R-4.4-winOKNov 01 2024
R-4.4-macOKNov 01 2024
R-4.3-winOKNov 01 2024
R-4.3-macOKNov 01 2024

Exports:BNBBSTNBBSTZINBBZINBcompute_NB_DICcompute_ZINB_DICconv.testget_adj_matqRankParqRankParTopResultTableSummaryResultTableSummary2TimetrendCurveUSDmapCount

Dependencies:base64encBayesLogitbigDbitopsbootbslibcachemcardsclicodacolorspacecommonmarkcpp11curldigestdotCall64dplyrevaluateexpmfansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtgtablegtsummaryhighrhtmltoolshtmlwidgetsisobandjquerylibjsonlitejuicyjuiceknitrlabelinglatticelifecyclemagrittrmapsmarkdownMASSMatrixmatrixcalcMatrixModelsmcmcMCMCpackmemoisemgcvmimemsmmunsellmvtnormnlmepillarpkgconfigplyrpurrrquantregR6rappdirsRColorBrewerRcppreactablereactRreshaperlangrmarkdownsassscalesspamSparseMstringistringrsurvivaltibbletidyrtidyselecttinytexutf8V8vctrsviridisviridisLitewithrxfunxml2yaml

BSTZINB_vignette

Rendered fromBSTZINB_vignette.Rmdusingknitr::rmarkdownon Nov 01 2024.

Last update: 2024-10-31
Started: 2024-06-07