Package: BSTZINB 2.0.1

BSTZINB: Association Among Disease Counts and Socio-Environmental Factors

Estimation of association between disease or death counts (e.g. COVID-19) and socio-environmental risk factors using a zero-inflated Bayesian spatiotemporal model. Non-spatiotemporal models and/or models without zero-inflation are also included for comparison. Functions to produce corresponding maps are also included. See Chakraborty et al. (2022) <doi:10.1007/s13253-022-00487-1> for more details on the method.

Authors:Suman Majumder [cre, aut, cph], Yoon-Bae Jun [aut, cph], Sounak Chakraborty [ctb], Chae-Young Lim [ctb], Tanujit Dey [ctb]

BSTZINB_2.0.1.tar.gz
BSTZINB_2.0.1.zip(r-4.7)BSTZINB_2.0.1.zip(r-4.6)BSTZINB_2.0.1.zip(r-4.5)
BSTZINB_2.0.1.tgz(r-4.6-any)BSTZINB_2.0.1.tgz(r-4.5-any)
BSTZINB_2.0.1.tar.gz(r-4.7-any)BSTZINB_2.0.1.tar.gz(r-4.6-any)
BSTZINB_2.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
BSTZINB/json (API)

# Install 'BSTZINB' in R:

install.packages('BSTZINB', repos = c('https://sumanm47.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/sumanm47/bstzinb/issues

Datasets:

county.adjacency - County.adjacency: A dataframe containing neighborhood information for counties in the US
simdat - Simdat: A simulated dataset containing response and covariates with region and time information
synth_dat_IA - Synth_dat_IA: A dataset containing county-wise synthsized counts for the state of Iowa over 16 time points and a covariate used to generate the data
USAcities - USAcities: A dataset containing state and county information for the cities in the United States

On CRAN:

4.18 score 2 scripts 263 downloads 17 exports 83 dependencies

Last updated from:5b6a86797c. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	170
source / vignettes	OK	496
linux-release-x86_64	OK	214
macos-release-arm64	OK	213
macos-oldrel-arm64	OK	201
windows-devel	OK	148
windows-release	OK	165
windows-oldrel	OK	132
wasm-release	OK	127

Exports:BNB BSTNB BSTZINB BZINB compute_NB_DIC compute_ZINB_DIC conv.test get_adj_mat print.DCMB print.summ.DCMB qRankPar qRankParTop ResultTableSummary ResultTableSummary2 summary.DCMB TimetrendCurve USDmapCount

Dependencies:base64enc BayesLogit bigD bitops bslib cachem cards cardx cli coda commonmark cpp11 curl digest dotCall64 dplyr evaluate expm farver fastmap fontawesome fs generics ggplot2 glue gridExtra gt gtable gtsummary highr htmltools htmlwidgets isoband jquerylib jsonlite juicyjuice knitr labeling lattice lifecycle litedown magrittr maps markdown Matrix matrixcalc memoise mime msm mvtnorm pillar pkgconfig plyr purrr R6 rappdirs RColorBrewer Rcpp reactable reactR reshape rlang rmarkdown S7 sass scales spam stringi stringr survival tibble tidyr tidyselect tinytex utf8 V8 vctrs viridis viridisLite withr xfun xml2 yaml

BSTZINB_vignette

Rendered fromBSTZINB_vignette.Rmdusingknitr::rmarkdown

Last update: 2026-03-17
Started: 2024-06-07

Help page	Topics
Fit a Bayesian Negative Binomial Model	BNB
Fit a Bayesian Spatiotemporal Negative Binomial model	BSTNB
Fit a Bayesian Spatiotemporal Zero Inflated Negative Binomial model	BSTZINB
Fit a Bayesian Zero Inflated Negative Binomial Model	BZINB
DIC for BSTNB or BNB fitted objects	compute_NB_DIC
DIC for BSTZINB fitted objects	compute_ZINB_DIC
convergence test for parameters in the fitted objects	conv.test
county.adjacency: A dataframe containing neighborhood information for counties in the US	county.adjacency
Adjacency matrix for counties of one or many states in the United States	get_adj_mat
Print function for DCMB class of objects	print.DCMB
Prints out the summary of a DCMB object	print.summ.DCMB
Bar plot for time-averaged log-q estimates over quantile-representative counties (descending order)	qRankPar
Bar plot for time-averaged log-q estimates over top ranking counties (descending order)	qRankParTop
Summary Table for a fitted object	ResultTableSummary
Generate a summary table of the outputs all different methods given the data	ResultTableSummary2
simdat: A simulated dataset containing response and covariates with region and time information	simdat
Summary function for objects of class DCMB	summary.DCMB
synth_dat_IA: A dataset containing county-wise synthsized counts for the state of Iowa over 16 time points and a covariate used to generate the data	synth_dat_IA
Time-trend curve over the study time domain for counties in the US	TimetrendCurve
USAcities: A dataset containing state and county information for the cities in the United States	USAcities
Draw spatial maps of various quantities over regions in the US	USDmapCount

Package: BSTZINB 2.0.1

BSTZINB: Association Among Disease Counts and Socio-Environmental Factors

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Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)